Neural Coding and Neurodegenerative Disease Lab
Software which we have contributed to the development of
FRI algorithm for spike train detection from two photon imaging
.
(See also
here
).
ca_transient.zip
MATLAB implementation for spike train detection from two-photon calcium imaging applying finite rate of innovation (FRI) techniques. If you use this software, we request that you cite:
Jon Oñativia, Simon R. Schultz, and Pier Luigi Dragotti,
A Finite Rate of Innovation algorithm for fast and accurate spike detection from two-photon calcium imaging
. (J. Neural Eng. 10 (2013) 046017).
The zip file contains a number of files to reproduce the results presented in the paper:
File
real_data.m
runs the double consistency algorithm on real data and reproduces figure 7 of the journal paper.
File
surrogate_data.m
runs the double consistency algorithm on surrogate data.
File
fig3.m
reproduces figure 3 of the journal paper.
File
fig9.m
reproduces figure 9 of the journal paper.
PyRho - Multiscale computational tools for optogenetics
.
RITA
- LabView software for controlling a two-photon targeted patch-clamping robot.